AluYg6
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000634 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 311 |
| Kimura value | 2.99 |
| Tau index | 0.0000 |
| Description | AluYg6 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAANTTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYg6 | h | 148 | 157 | + | 14.94 | GGCGCGCGCC |
| AluYg6 | h | 148 | 157 | - | 14.94 | GGCGCGCGCC |
| AluYg6 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYg6 | Spps | 208 | 218 | - | 14.75 | GCTCCGCCTCC |
| AluYg6 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYg6 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYg6 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYg6 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
| AluYg6 | E(spl)mgamma-HLH | 147 | 156 | - | 13.84 | GCGCGCGCCA |
| AluYg6 | RPN4 | 145 | 151 | + | 13.80 | GGTGGCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
