AluYe6
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001174 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominidae |
| Length | 310 |
| Kimura value | 4.13 |
| Tau index | 0.0000 |
| Description | AluYe6 subfamily |
| Comment | Derived by coseg. Previously reported as AluYf5. Renamed to AluYe lineage. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYe6 | DOF5.1 | 289 | 307 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 290 | 308 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 291 | 309 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 292 | 310 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF3.6 | 278 | 298 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYe6 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYe6 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYe6 | SP2 | 210 | 218 | + | 14.43 | GGGGCGGAG |
| AluYe6 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYe6 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
