AluYe6
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001174 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominidae |
| Length | 310 |
| Kimura value | 4.13 |
| Tau index | 0.0000 |
| Description | AluYe6 subfamily |
| Comment | Derived by coseg. Previously reported as AluYf5. Renamed to AluYe lineage. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYe6 | btd | 209 | 217 | + | 15.92 | GGGGGCGGA |
| AluYe6 | Zfx | 44 | 53 | - | 15.70 | GCCTCGGCCT |
| AluYe6 | DOF5.1 | 281 | 299 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 282 | 300 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 283 | 301 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 284 | 302 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 285 | 303 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 286 | 304 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 287 | 305 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYe6 | DOF5.1 | 288 | 306 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
