AluYe6
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001174 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominidae |
| Length | 310 |
| Kimura value | 4.13 |
| Tau index | 0.0000 |
| Description | AluYe6 subfamily |
| Comment | Derived by coseg. Previously reported as AluYf5. Renamed to AluYe lineage. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYe6 | BPC1 | 282 | 305 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 283 | 306 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 284 | 307 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 285 | 308 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 286 | 309 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 287 | 310 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | BPC1 | 280 | 303 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluYe6 | Rarb | 56 | 71 | + | -6.02 | GCGGATCACGAGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
