AluYe6
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001174 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominidae |
| Length | 310 |
| Kimura value | 4.13 |
| Tau index | 0.0000 |
| Description | AluYe6 subfamily |
| Comment | Derived by coseg. Previously reported as AluYf5. Renamed to AluYe lineage. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYe6 | DOF3.6 | 289 | 309 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYe6 | DOF3.6 | 290 | 310 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYe6 | DOF3.6 | 280 | 300 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| AluYe6 | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluYe6 | ZNF213 | 250 | 261 | - | 18.09 | GCCCAGGCTGGA |
| AluYe6 | ZNF460 | 205 | 220 | - | 17.52 | GGCTCCGCCCCCCGGG |
| AluYe6 | DOF3.6 | 279 | 299 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| AluYe6 | Spps | 209 | 219 | - | 17.33 | GCTCCGCCCCC |
| AluYe6 | SP1 | 210 | 218 | + | 16.13 | GGGGCGGAG |
| AluYe6 | SP4 | 210 | 218 | + | 16.07 | GGGGCGGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
