AluYd8
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000060 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 299 |
| Kimura value | 5.14 |
| Tau index | 0.8321 |
| Description | AluYd8 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. Formerly named AluYc5. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYd8 | DOF3.6 | 267 | 287 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYd8 | GAL4 | 224 | 238 | + | 15.10 | CGCGCCACAGCACTC |
| AluYd8 | ZNF460 | 192 | 207 | - | 15.09 | AGCTCCGCCTTCCGGG |
| AluYd8 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYd8 | ZNF257 | 171 | 180 | + | 14.53 | GAGGCAGGAG |
| AluYd8 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYd8 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYd8 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
| AluYd8 | ELF4 | 190 | 201 | + | 13.61 | AACCCGGAAGGC |
| AluYd8 | ZNF384 | 270 | 277 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
