AluYa8
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000054 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 310 |
| Kimura value | 8.85 |
| Tau index | 0.0000 |
| Description | AluYa8 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYa8 | DOF3.6 | 278 | 298 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYa8 | ZNF135 | 172 | 185 | - | 14.96 | CCTCAGCCTCCCAA |
| AluYa8 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYa8 | Spps | 207 | 217 | - | 14.75 | GCTCCGCCTCC |
| AluYa8 | ZNF257 | 182 | 191 | + | 14.53 | GAGGCAGGAG |
| AluYa8 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYa8 | JKD | 119 | 130 | - | 14.32 | TTTTGTAGTTTT |
| AluYa8 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYa8 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
| AluYa8 | ZNF384 | 281 | 288 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
