AluSx3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000049 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 311 |
| Kimura value | 6.64 |
| Tau index | 0.6806 |
| Description | AluSx3 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSx3 | DOF5.1 | 292 | 310 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSx3 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSx3 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluSx3 | luna | 139 | 147 | - | 15.26 | ACCACGCCC |
| AluSx3 | ZNF135 | 205 | 218 | - | 15.26 | CCTCCGCCTCCCGG |
| AluSx3 | Klf3/8/12 | 139 | 147 | - | 15.24 | ACCACGCCC |
| AluSx3 | h | 148 | 157 | + | 14.94 | GGCGCGCGCC |
| AluSx3 | h | 148 | 157 | - | 14.94 | GGCGCGCGCC |
| AluSx3 | KLF3 | 139 | 148 | - | 14.83 | CACCACGCCC |
| AluSx3 | ERF057 | 208 | 221 | - | 14.79 | CAACCTCCGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
