AluSx1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000048 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Haplorrhini |
| Length | 312 |
| Kimura value | 7.10 |
| Tau index | 0.7579 |
| Description | AluSx1 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSx1 | BPC1 | 284 | 307 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 285 | 308 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 286 | 309 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 287 | 310 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 288 | 311 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 289 | 312 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | BPC1 | 282 | 305 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluSx1 | Rarg | 57 | 73 | + | -3.51 | CGGATCACCTGAGGTCA |
| AluSx1 | RARA | 67 | 84 | + | -5.41 | GAGGTCAGGAGTTCGAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
