AluSq4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000046 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 311 |
| Kimura value | 6.53 |
| Tau index | 0.9459 |
| Description | AluSq4 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAAACCGGAAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSq4 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSq4 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluSq4 | luna | 138 | 146 | - | 15.26 | ACCACGCCC |
| AluSq4 | Klf3/8/12 | 138 | 146 | - | 15.24 | ACCACGCCC |
| AluSq4 | ets-7 | 202 | 211 | + | 15.24 | AACCGGAAGG |
| AluSq4 | Prdm4 | 196 | 206 | + | 15.04 | GCTTGAAACCG |
| AluSq4 | KLF3 | 138 | 147 | - | 14.83 | CACCACGCCC |
| AluSq4 | ERF::FOXI1 | 201 | 210 | + | 14.60 | AAACCGGAAG |
| AluSq4 | ZNF257 | 182 | 191 | + | 14.53 | GAGGCAGGAG |
| AluSq4 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
