AluSp
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000042 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 313 |
| Kimura value | 6.87 |
| Tau index | 0.7222 |
| Description | AluSp subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAANTTAGCCGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSp | IRF9 | 262 | 276 | + | -0.25 | AACAAGAGCGAAACT |
| AluSp | IRF4 | 264 | 277 | + | -0.62 | CAAGAGCGAAACTC |
| AluSp | BPC1 | 283 | 306 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluSp | Nr2F6 | 67 | 81 | + | -2.31 | GAGGTCGGGAGTTCG |
| AluSp | Rarb | 66 | 81 | + | -3.88 | TGAGGTCGGGAGTTCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
