AluSp
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000042 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 313 |
| Kimura value | 6.87 |
| Tau index | 0.7222 |
| Description | AluSp subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAANTTAGCCGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSp | DOF3.6 | 291 | 311 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSp | DOF3.6 | 292 | 312 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSp | DOF3.6 | 293 | 313 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSp | DOF3.6 | 283 | 303 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| AluSp | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluSp | ZNF213 | 250 | 261 | - | 18.09 | GCCCAGGCTGGA |
| AluSp | AS2 | 211 | 228 | + | 17.57 | AGGCGGAGGTTGCGGTGA |
| AluSp | DOF3.6 | 282 | 302 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| AluSp | ZNF135 | 174 | 187 | - | 16.04 | CCTCAGCCTCCCGA |
| AluSp | ZNF135 | 71 | 84 | - | 15.96 | TCTCGAACTCCCGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
