AluSc8
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000038 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 311 |
| Kimura value | 6.47 |
| Tau index | 0.8267 |
| Description | AluSc8 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCACGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSc8 | DOF5.1 | 291 | 309 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSc8 | DOF5.1 | 292 | 310 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSc8 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSc8 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluSc8 | E(spl)mgamma-HLH | 147 | 156 | - | 15.39 | GCGCGTGCCA |
| AluSc8 | E(spl)mbeta-HLH | 148 | 155 | - | 15.34 | CGCGTGCC |
| AluSc8 | luna | 139 | 147 | - | 15.26 | ACCACGCCC |
| AluSc8 | ZNF135 | 205 | 218 | - | 15.26 | CCTCCGCCTCCCGG |
| AluSc8 | Klf3/8/12 | 139 | 147 | - | 15.24 | ACCACGCCC |
| AluSc8 | E(spl)mdelta-HLH | 147 | 155 | - | 14.93 | CGCGTGCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
