AluSc8
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000038 |
|---|---|
| TE superfamily | Alu |
| TE order | SINE |
| Species | Simiiformes |
| Length | 311 |
| Kimura value | 6.47 |
| Tau index | 0.8267 |
| Description | AluSc8 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCACGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSc8 | DOF3.6 | 289 | 309 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSc8 | DOF3.6 | 290 | 310 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSc8 | DOF3.6 | 291 | 311 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSc8 | DOF3.6 | 281 | 301 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| AluSc8 | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluSc8 | ZNF213 | 249 | 260 | - | 18.09 | GCCCAGGCTGGA |
| AluSc8 | DOF3.6 | 280 | 300 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| AluSc8 | ZNF135 | 173 | 186 | - | 16.04 | CCTCAGCCTCCCGA |
| AluSc8 | h | 148 | 157 | + | 15.79 | GGCACGCGCC |
| AluSc8 | h | 148 | 157 | - | 15.79 | GGCGCGTGCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
