AluJr4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000036 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 312 |
| Kimura value | 14.80 |
| Tau index | 0.8015 |
| Description | AluJr4 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGGCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTACAAAAAATTTAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTCGAGGTTACAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCTGTCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluJr4 | DOF3.6 | 292 | 312 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluJr4 | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluJr4 | ZNF213 | 250 | 261 | - | 18.09 | GCCCAGGCTGGA |
| AluJr4 | ZNF135 | 206 | 219 | - | 18.03 | CCTCGAACTCCTGG |
| AluJr4 | ZNF213 | 84 | 95 | - | 16.11 | GCCCAGGCTGGT |
| AluJr4 | ZNF135 | 174 | 187 | - | 16.04 | CCTCAGCCTCCCGA |
| AluJr4 | ZNF135 | 71 | 84 | - | 16.03 | TCTCGAACTCCTGG |
| AluJr4 | TCX6 | 118 | 132 | - | 15.96 | TTTTAAATTTTTTGT |
| AluJr4 | Zfx | 44 | 53 | - | 15.70 | GCCTCGGCCT |
| AluJr4 | DOF5.1 | 284 | 302 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
