AluJr
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000035 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 312 |
| Kimura value | 13.46 |
| Tau index | 0.7773 |
| Description | AluJr subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGGCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTACAAAAAATATAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGNTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluJr | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluJr | DOF5.1 | 294 | 312 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluJr | DOF3.6 | 280 | 300 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluJr | ZBTB6 | 198 | 206 | + | 15.31 | GCTTGAGCC |
| AluJr | luna | 140 | 148 | - | 15.26 | ACCACGCCC |
| AluJr | Klf3/8/12 | 140 | 148 | - | 15.24 | ACCACGCCC |
| AluJr | h | 149 | 158 | + | 14.94 | GGCGCGCGCC |
| AluJr | h | 149 | 158 | - | 14.94 | GGCGCGCGCC |
| AluJr | KLF3 | 140 | 149 | - | 14.83 | CACCACGCCC |
| AluJr | Clamp | 262 | 275 | + | 14.45 | GACAGAGCGAGACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
