AluJr
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000035 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 312 |
| Kimura value | 13.46 |
| Tau index | 0.7773 |
| Description | AluJr subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGGCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTACAAAAAATATAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGNTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluJr | BPC1 | 288 | 311 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJr | BPC1 | 289 | 312 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJr | BPC1 | 282 | 305 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluJr | Nr2F6 | 67 | 81 | + | -2.40 | GAGGCCAGGAGTTCG |
| AluJr | Rarb | 66 | 81 | + | -5.83 | TGAGGCCAGGAGTTCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
