AluJb
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000007 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 312 |
| Kimura value | 11.56 |
| Tau index | 0.8061 |
| Description | AluJb subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. This element is described in "Origin and evolution of Alu repetitive elements", by Jurka J., in Molecular Biology Intelligence Unit: The impact of short interspersed elements (SINEs) on the host genome (ed. Richard J. Maraia), R.G.Landes Company, Austin, pp.25-41 (1995). |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGNGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATGGCGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCGGGAGGTCGAGGCTGCAGTGAGCCGTGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluJb | SNT2 | 233 | 242 | + | 1.91 | TGATCGCGCC |
| AluJb | PAX9 | 222 | 237 | - | 1.35 | GATCACGGCTCACTGC |
| AluJb | BPC1 | 283 | 306 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 284 | 307 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 285 | 308 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 286 | 309 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 287 | 310 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 288 | 311 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 289 | 312 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluJb | BPC1 | 282 | 305 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
